Package: marmap 1.0.12

Benoit Simon-Bouhet

marmap: Import, Plot and Analyze Bathymetric and Topographic Data

Import bathymetric and hypsometric data from the NOAA (National Oceanic and Atmospheric Administration, <https://www.ncei.noaa.gov/products/etopo-global-relief-model>), GEBCO (General Bathymetric Chart of the Oceans, <https://www.gebco.net>) and other sources, plot xyz data to prepare publication-ready figures, analyze xyz data to extract transects, get depth / altitude based on geographical coordinates, or calculate z-constrained least-cost paths.

Authors:Eric Pante [aut], Benoit Simon-Bouhet [aut, cre], Jean-Olivier Irisson [aut]

marmap_1.0.12.tar.gz
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marmap_1.0.12.tgz(r-4.6-any)marmap_1.0.12.tgz(r-4.5-any)
marmap_1.0.12.tar.gz(r-4.7-any)marmap_1.0.12.tar.gz(r-4.6-any)
marmap_1.0.12.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
marmap/json (API)

# Install 'marmap' in R:
install.packages('marmap', repos = c('https://ericpante.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ericpante/marmap/issues

Datasets:
  • aleutians - Bathymetric data for the Aleutians
  • celt - Bathymetric data for the North Est Atlantic
  • florida - Bathymetric data around Florida, USA
  • hawaii - Bathymetric data for Hawaii, USA
  • hawaii.sites - Bathymetric data for Hawaii, USA
  • irregular - Irregularly spaced bathymetric data.
  • metallo - Coral sampling information from the North West Atlantic
  • nw.atlantic - Bathymetric data for the North West Atlantic
  • nw.atlantic.coast - Coastline data for the North West Atlantic

On CRAN:

Conda:

10.16 score 34 stars 1 packages 992 scripts 1.6k downloads 42 mentions 46 exports 44 dependencies

Last updated from:f5f908febc. Checks:7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE318
source / vignettesOK208
linux-release-x86_64NOTE274
macos-release-arm64NOTE208
macos-oldrel-arm64NOTE202
windows-develNOTE257
windows-releaseNOTE270
windows-oldrelNOTE408
wasm-releaseOK165

Exports:antimeridian.boxas.bathyas.rasteras.SpatialGridDataFrameas.xyzautoplot.bathycheck.bathycol2alphacollate.bathycombine.bufferscreate.bufferdiag.bathydist2isobathetopoetopo.colorsfortify.bathyget.areaget.boxget.depthget.sampleget.transectgetNOAA.bathygriddifyis.bathylc.distlc.dist2linesGCoutline.bufferpalette.bathypath.profileplot.bathyplot.bufferplotAreaplotProfileprint.bufferread.bathyreadGEBCO.bathyscale_color_etoposcale_fill_etoposcaleBathysetSQLspace.piessubsetBathysubsetSQLsummary.bathytrans.mat

Dependencies:adehabitatMAbitbit64blobcachemclicpp11DBIfarverfastmapgdistancegeosphereggplot2gluegtableigraphisobandlabelinglatticelifecyclemagrittrMatrixmemoisencdf4pkgconfigplotrixplyrR6rasterRColorBrewerRcppreshape2rlangRSQLiteS7scalesshapespstringistringrterravctrsviridisLitewithr

Analysing bathymetric data in R with marmap
Extracting information from bathymetric data | Computing distances | 3D plotting | Working with big files | Interactions with other packages, projections
Rendered frommarmap-DataAnalysis.pdf.asisusingR.rsp::asis

Last update: 2014-11-05
Started: 2014-11-05

Data import and export strategies in marmap
Overview of the different import and export strategies available in marmap | Importing bathymetric data from GEBCO | Other sources of netcdf files | Getting bathymetric data from an xyz file | Getting bathymetric data from NOAA: local SQL database
Rendered frommarmap-ImportExport.pdf.asisusingR.rsp::asis

Last update: 2014-11-05
Started: 2014-11-05

Making and using bathymetric maps in R with marmap
Introduction | A quick tutorial | Further reading
Rendered frommarmap.pdf.asisusingR.rsp::asis

Last update: 2014-11-05
Started: 2014-11-05

Readme and manuals

Help Manual

Help pageTopics
Bathymetric data for the Aleutians (Alaska)aleutians
Adds a box to maps including antimeridianantimeridian.box
Convert to bathymetric data in an object of class bathyas.bathy
Convert bathymetric data to a raster layeras.raster
Convert bathymetric data to a spatial gridas.SpatialGridDataFrame
Convert to xyz formatas.xyz
Ploting bathymetric data with ggplotautoplot.bathy
Bathymetric data for the North Est Atlanticcelt
Sort bathymetric data matrix by increasing latitude and longitudecheck.bathy
Adds alpha transparency to a (vector of) color(s)col2alpha
Collates two bathy matrices with data from either sides of the antimeridiancollate.bathy
Create a new, (non circular) composite buffer from a list of existing buffers.combine.buffers
Create a buffer of specified radius around one or several pointscreate.buffer print.buffer
Finds matrix diagonal for non-square matricesdiag.bathy
Computes the shortest great circle distance between any point and a given isobathdist2isobath
Etopo coloursetopo etopo.colors etopo.colours scale_color_etopo scale_colour_etopo scale_fill_etopo
Bathymetric data around Florida, USAflorida
Extract bathymetry data in a data.framefortify.bathy
Get projected surface areaget.area
Get bathymetric information of a belt transectget.box
Get depth data by clicking on a mapget.depth
Get sample data by clicking on a mapget.sample
Compute approximate cross section along a depth transectget.transect
Import bathymetric data from the NOAA servergetNOAA.bathy
Fill a grid with irregularly spaced datagriddify
Bathymetric data for Hawaii, USAhawaii hawaii.sites
Irregularly spaced bathymetric data.irregular
Test whether an object is of class bathyis.bathy
Computes least cost distances between two or more locationslc.dist
Computes least cost distances between two or more locationslc.dist2
Add Great Circle lines on a maplinesGC
Import, plot and analyze bathymetric and topographic datamarmap-package marmap
Coral sampling information from the North West Atlanticmetallo
Bathymetric data for the North West Atlanticnw.atlantic
Coastline data for the North West Atlanticnw.atlantic.coast
Get a composite buffer in a format suitable for plotting its outlineoutline.buffer
Builds a bathymetry- and/or topography-constrained color palettepalette.bathy
Geographic coordinates, kilometric distance and depth along a pathpath.profile
Ploting bathymetric dataplot.bathy
Plots a circular buffer and or its outlineplot.buffer
Plotting projected surface areasplotArea
Ploting bathymetric data along a transect or pathplotProfile
Read bathymetric data in XYZ formatread.bathy
Read bathymetric data from a GEBCO filereadGEBCO.bathy
Adds a scale to a mapscaleBathy
Automatic placement of piecharts on mapsspace.pies
Creates bathy objects from larger bathy objectssubsetBathy
Creating and querying local SQL database for bathymetric datasetSQL subsetSQL
Summary of bathymetric data of class 'bathy'summary.bathy
Transition matrixtrans.mat